/******************************************************************************
	This file is a part of the Snapshot Bioinformatics Project

	Copyright (C) 2012-2013 Jarom Schow

	This program is free software: you can redistribute it and/or modify
	it under the terms of the GNU General Public License as published by
	the Free Software Foundation, either version 3 of the License, or
	(at your option) any later version.

	This program is distributed in the hope that it will be useful,
	but WITHOUT ANY WARRANTY; without even the implied warranty of
	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
	GNU General Public License for more details.

	You should have received a copy of the GNU General Public License
	along with this program.  If not, see <http://www.gnu.org/licenses/>.
******************************************************************************/
#ifndef SEQ_RANGE_H
#define SEQ_RANGE_H

#include "BioDefs.h"

#include <QtCore/QList>

#include "SeqLocation.h"

namespace Bio {

class BIO_EXPORT SeqRange {
public:
	SeqRange();
	SeqRange( const SeqRange &range );
	virtual ~SeqRange();

	void	switchStrand();
	void	addLocation( const SeqLocation &location );

	bool	isEmpty() const;
	int		getNumLocations() const;
	QString	toString() const;

	SeqLocation	getLocation( int which ) const;

	QListIterator<SeqLocation>	getLocationIterator() const;

	SeqRange&	operator=( const SeqRange &other );

private:
	
	QList<SeqLocation>	m_locations;
};

}; // Bio

#endif // SEQ_RANGE_H